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E_Genomes_110308f.txt (You can decide either to change directly the table or to modify the txt file and re-upload it)
Unless otherwise indicated, all the genome are unmasked.
@= /data/FC/DB/Genomes/
.. |
Scientific Name |
Common Name |
Taxonomic Info |
Genome_size |
Genes |
Chr |
Divergence |
Version |
Pointer@ |
Source |
Date |
Notes |
Ag |
Anopheles gambiae |
Mosquito |
Eukaryotes/Fungi-Metazoa/..Arthropoda |
278Mb |
14000 |
2L-R, 3L-R, X |
250 Mys from Dm |
v 2.0 2003 |
/Ag |
e! |
Apr-04 |
not masked; problems w 2R,3R, X UNK |
At |
Arabidopsis thaliana |
Flowering plant |
Eukaryotes/Viridiplantae |
125Mb |
>25.000 |
5 |
.. |
2003 |
/At_2003 |
NCBI |
Jun 05 |
.. |
Cf |
Canis familiaris |
Dog |
Eukaryotes/Fungi-Metazoa/..Vertebrates |
.. |
.. |
.. |
.. |
v 1.0 |
/Cf_v1 |
UCSC |
Jul 04 |
Chr1, ChrUn |
Ce |
Caenorhabditis elegans |
Worm |
Eukaryotes/Fungi-Metazoa/..Nematodes |
97Mb |
19000 |
6 |
.. |
WS170 |
/Ce_170 |
UCSC |
Jan 08 |
.. |
Ch |
Cryptosporidium hominis |
Alveolata |
Eukaryotes/Alveolata/Apicomplexa |
~9Mb |
~4000 |
v 1.0 |
.. |
.. |
/Protists/Ch_v1 |
Jun 05 |
.. |
|
Ci |
Ciona intestinalis |
Sea Squirt |
Eukaryotes/Fungi-Metazoa/..Urochordata |
160Mb |
~16000 |
14 |
.. |
v 2.0 |
/Ci_JGI2 |
JGI |
Aug 05 |
masked with low cases |
Cm |
Cyanidioschyzon merolae |
Red Alga |
Eukaryotes/Rhodophita |
16Mb |
5331 |
20 |
.. |
.. |
/Cm_v1 |
Jun 05 |
.. |
|
Dd |
Dictyostelium discoideum |
Mold |
Eukaryotes/Mycetozoa (Amebozoa) |
34Mb |
~12500 |
6 |
.. |
v 1.0 |
/Protists/Dd_v1 |
dictybase.org |
May 05 |
.. |
Dm |
Drosophila melanogaster |
Fruit Fly |
Eukaryotes/Fungi-Metazoa/..Arthropoda |
120Mb |
13600 |
7 |
.. |
dm3, BDGP Release 5 |
Dm3_v5 (Apr06) |
UCSC Jan08 |
7227 |
.. |
Dr |
Danio rerio |
Zebrafish |
Eukaryotes/Fungi-Metazoa/..Vertebrata |
.. |
.. |
25, M, NA |
.. |
danRer5_zv7 (Jul07) |
Dr5_zv7 |
e!UCSC |
Jan 08 |
Nov 03Freeze May05 |
Ecu |
Encephalitozoon cuniculi |
Microsporidian |
Eukaryotes/Fungi/Microsporidia/ |
2.49Mb |
1996 |
11 |
.. |
.. |
/Ecu_Jan_06/ |
JGI |
Jan 2006 |
Genome and proteins |
Eh |
Entamoeba histolytica |
Eukaryotes/Entamoebidae (Amebozoa) |
18-20Mb |
14 |
.. |
.. |
v 1.0 |
/Protists/Eh_v1 |
TIGR |
.. |
.. |
|
Fr |
Fugu rubripes |
Puffer fish |
Eukaryotes/Fungi-Metazoa/..Vertebrata |
365Mb |
<30000 |
.. |
450Mys from Hs |
fr2_JGI V4.0 (Oct04) |
Fr_v2 |
UCSC |
Jan 08 |
Compact genome |
Gg |
Gallus gallus |
Chicken |
Eukaryotes/Fungi-Metazoa/..Vertebrata |
30 |
310 Mys from Hs |
.. |
.. |
galGal3 (May06) |
/Gg_v3 |
UCSC |
Jan 08 |
.. |
Gl |
Giardia lamblia |
Giardia |
Eukaryotes/Diplomonadida |
~12Mb |
~9000 |
5 |
basal eu |
.. |
/Protists/Gl |
incomplete |
||
Hs |
Homo sapiens |
Human |
Eukaryotes/Fungi-Metazoa/..Primates |
3.9Gb |
20k-30k |
22,X,Y |
.. |
B.34 B.35 B.36 |
/old/Hs_v34 /old/Hs_v35 /Hs_v36 |
UCSC |
10/03 10/04 04/06 |
SD:5-6%; CDS1-3% |
Lm |
Leishmania major |
Leishmania |
Eukaryotes/Euglenozoa |
incomplete |
/Protists/Lm_v5.1 |
.. |
.. |
.. |
.. |
.. |
.. |
.. |
Mm |
Mus musculus |
Mouse |
Eukaryotes/Fungi-Metazoa/..Rodents |
2.9Gb |
20k-30k |
19, X, Y |
75-100Mys from Hs |
B.33 B.35 |
/old/Mm_v33 /Mm_v35 |
UCSCmmm7, August 2005 |
37346 |
90% sintenic to Hs; SD:1-2% |
Nc |
Neurospora crassa |
.. |
Eukaryotes/Fungi-Metazoa/Fungi |
40Mb |
10000 |
.. |
.. |
.. |
.. |
.. |
.. |
.. |
Os |
Oryza sativa |
Rice |
Eukaryotes/Viridiplantae |
.. |
.. |
.. |
.. |
.. |
/Os_v1 |
TIGR |
Jun 05 |
.. |
Pt |
Pan troglodytes |
Chimp |
Eukaryotes/Fungi-Metazoa/..Primates |
3.2Gb |
.. |
.. |
.. |
v 1.0Nov03 |
/Pt_v1 |
UCSC |
Jun 06 |
.. |
Rn |
Rattus norvegicus |
Rat |
Eukaryotes/Fungi-Metazoa/..Rodents |
2.75Gb |
.. |
20, X, Y |
25Mys from Mm |
rn3 |
/Rn_v3 |
UCSC |
Jan 05 |
SD: 3% |
Sc |
Saccharomyces cerevisiae |
Budding yeast |
Eukaryotes/Fungi-Metazoa/Fungi |
12Mb |
6000 |
.. |
.. |
.. |
/Sc/Sc_2003 /Sc/Sc_mrna_Jan06.fa |
SGD |
Oct 03 |
.. |
Sp |
Schyzosaccharomyces pombe |
Fission yeast |
Eukaryotes/Fungi-Metazoa/Fungi |
14Mb |
<5000 |
3 |
.. |
.. |
.. |
.. |
.. |
.. |
Su |
Strongylocentrotus purpuratus/ |
Sea urchint |
Eukaryota; Fungi/Metazoa group;...Echinodermata |
.. |
.. |
.. |
.. |
36981 |
/Su_0.5 |
UCSC |
June06 |
incomplete |
Tp |
Thalassiosira pseudonana |
.. |
Eukaryotes/stramenofiles/ (Diatoms) |
.. |
.. |
24 |
.. |
v 1.0 |
/Protists/Tp_v1 |
JGI |
May 05 |
.. |
Xt |
Xenopus tropicalis |
Frog |
Eukaryotes/Metazoa/Chordata/Amphibia/Anura/Pipidae/Xenopus |
1.5 Gb |
19,501 scaffolds |
.. |
.. |
v4.1 |
/Xt_v4.1 |
ENSEMBL JGI |
June 2006 |
.. |